12-Day Island Hopping Itinerary from Manila — Boracay, El Nido, Palawan, Bohol & More

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Boracay Island
The Philippines’ most famous island resort, Boracay, White Sand Beach

❓ Question: Is it possible to visit Boracay, El Nido (Palawan), and Bohol in 12 days leaving and returning to Manila — with nice accommodation & pools each stop, for two people?

Short answer:
Yes — it’s feasible, but you’ll need to plan carefully to avoid wasting time in transit. With 12 days you can hit about 3–4 major destinations comfortably (for example: Boracay, Palawan, Bohol), plus perhaps squeeze in a 4th if travel is efficient. Staying in comfortable hotels with pools will increase cost, but with good planning it can be done.

Boracay El Nido Palawan Bohol itinerary map 2

The problem though you will see from this map above that the distances traveled are rather great (note the measured 50km distance bottom right), so generally we advise to focus on individual regions during each visit instead of trying to see top spots all in the same limited time frame. After all, it is a country of more than 7,000 islands spread out over a large area and should be smartly treated as several countries.

✅ Sample 12-Day Itinerary Suggestion

Here’s a sample itinerary; you can adjust the number of nights per place depending on your priorities.

Day Destination Activity Highlights
Day 1 ManilaBoracay Fly Manila → Caticlan (or Kalibo), transfer to Boracay; relax on the beach, sunset views
Day 2-3 Boracay Island hopping, water sports, nice resort with pool (e.g. upscale resort like Mövenpick or similar)
Day 4 Travel to Palawan (Puerto Princesa or El Nido) Fly Boracay → Manila or Cebu, then Manila → Palawan; settle in El Nido or Puerto Princesa
Day 5-7 Palawan (El Nido region) Island hopping among the lagoons, beach time, snorkeling, possibly a boat cruise; stay in hotel/resort with pool
Day 8 Travel to Bohol Fly Palawan → Cebu or Manila → Tagbilaran via Cebu; settle in Bohol (Panglao or nearby)
Day 9-10 Bohol Chocolate Hills, Loboc river cruise, Panglao beaches, dive/snorkel, resort with pool
Day 11 Optional extra destination or relaxation Could insert another quick stop (e.g. Cebu / Moalboal) or more time relaxing in one of the previous islands
Day 12 Return to Manila Depart from the last island → flight returning to Manila; buffer time for flight connections

💡 Example Hotels (“Nice Accommodation with Pool”)

Shangri La Boracay
Shangri-La Boracay

Here are examples of hotels/resorts with good pools and comfort in each location:

Destination Example Hotel / Resort
Boracay Mövenpick Boracay; Shangri-La Boracay; etc.
El Nido (Palawan) El Nido Resorts (Lagen or Pangulasian); or upscale lodgings with dramatic island or cliff settings
Bohol (Panglao) Resorts in Panglao with beach & pool; e.g. Henann Resort or similar

💰 Rough Cost Estimate (for Two People, 12 Days)

El Nido Beach Surprise Wedding Proposal by sunset
We also organize proposal tours!

Here’s a ballpark budget for two, staying in comfortable hotels, flying between islands, meals, tours, etc. Prices in USD / PHP (approximate as of mid-2025, may vary):

Category Estimated Cost (2 people)
Domestic Flights (e.g. Manila → Caticlan / Kalibo → Palawan → Bohol → Manila) US$500–800 (~ ₱28,000-₱45,000) depending on airline and season
Accommodation (3-4 stars / nice resorts with pools) US$100-200/night → ~ US$1,200-2,400 (~ ₱68,000-₱135,000)
Tours & Island Hopping + Transfers ~ US$400-800 (~ ₱22,000-₱45,000) depending on number of tours, boat trips etc.
Meals, Local Transport, Miscellaneous ~ US$300-500 (~ ₱17,000-₱28,000)
Total Estimated Budget US$2,400-3,500 (~ ₱135,000-₱250,000) for two people for 12 days

⚠️ Challenges & Tips

the beach house at ocam ocam pool

  • Flight schedules: Some island destinations (like El Nido) have limited flights; booking early helps.
  • Transit & travel time: Moving between islands takes time — small flights, ferries, land transfers. Factor in buffer days.
  • Peak season pricing: Resorts with pools / high quality go up in price during holidays; consider off-peak or book well in advance.
  • Balance sightseeing vs relaxation: Too many places means more travel fatigue; you may prefer fewer stops with deeper experiences.

✅ Possible Variations & Additions

travel guide siargao river
Siargao River

If you have preferences, here are alternate ideas:

  • Replace Boracay with Siargao if you prefer surfing or fewer tourists.
  • Drop one destination (e.g. skip Bohol or reduce nights there) to allow more time in Palawan or add Moalboal or Malapascua.
  • If time allows, include an extra stop like Cebu city / Moalboal for sardine run/snorkeling.

What’s feasible in 12 days?

the beach house at ocam ocam beach

For 2 guests · Nice accommodation with pools · Boracay, El Nido, Bohol

Yes—three destinations is the sweet spot. Flights aren’t always direct (especially to/from El Nido), so we’ll stack travel days smartly and keep nights to 3–4 per stop for a good pace.

Option A — Comfort (great value)

Route: Manila → Boracay (3N)El Nido (4N)Bohol/Panglao (4N) → Manila
Total sample budget (2 pax): US$2,900–$3,800 for everything below (season-dependent)

Hotels (all with pools)
Mövenpick Boracay
Mövenpick Resort & Spa Boracay
  • Boracay: Mövenpick Resort & Spa Boracay (private beach & pool) — movenpick.accor.com Mövenpick Hotels & Resorts+1
  • El Nido: Seda Lio (beachfront, big pool; 5 minutes from ENI airport) — sedahotels.com/seda-lio Seda Hotels+1
  • Bohol (Panglao): Henann Resort Alona Beach (multiple pools, beachfront) — henann.com/bohol/henannalonabeach/ Henann Resort+1
Island-hopping / tours (join-in examples)
secret-lagoon-el-nido-entrance
Secret Lagoon El Nido entrance
  • Boracay island hopping (5 hrs, with Crystal Cove stop): US$29–$40 pp — GetYourGuide/Viator examples.
  • El Nido Tour A or C (lagoons & beaches): ~US$30–$45 pp (join-in). Or we can arrange private tours at these sites.
  • Bohol Balicasag + Virgin Island (snorkeling/dolphins): US$45–$95 pp depending on operator/private vs join-in.
  • Bohol Countryside (Chocolate Hills, Tarsiers, Loboc River): US$56–$79 pp (shared/private samples).
Flights & hops (typical)

Two people paddle in a yellow kayak over the clear turquoise waters of El Nido, revealing rocks and coral beneath the surface. This vibrant Palawan scene conveys a sense of adventure and tranquility, perfect for island hopping enthusiasts seeking hidden wonders.

  • MNL → Boracay (Caticlan): daily, multiple carriers.
  • Boracay → El Nido: usually via Manila or Cebu; AirSWIFT flies direct routes into ENI on select days—mix & match to save time. AirSwift+2AirSwift+2
  • El Nido → Bohol: most practical is ENI → CEB (AirSWIFT) then CEB → TAG (flight) or ferry to Tagbilaran/Panglao. AirSwift
  • Bohol → MNL: daily flights.

Option B — Premium (nicer rooms + 1 private boat day)

Total sample budget (2 pax): US$4,500–$6,000

Hotels upgrade ideas
Bohol Amorita Resort
Bohol Amorita Resort
  • Boracay: Mövenpick (keep) or Shangri-La Boracay (ultra-quiet cove).
  • El Nido: Seda Lio (Suite) or El Nido Resorts – Lagen (lagoon setting; pools).
  • Bohol: Amorita Resort or Henann Premier w/ Direct Pool Access (room category). Henann Resort+1
  • Tours tweak
  • 1× private island-hopping day (either El Nido or Bohol) for flexibility (US$180–$350 total boat, depending on size/season).

  • Add kayaks/sup/photographer options where available.

Option C — Luxury (top rooms + private boats + concierge)

Total sample budget (2 pax): US$7,500–$10,000+

Pangulasian Lagen in El Nido
Pangulasian Lagen in El Nido
  • Suites/villas at the properties above (or Pangulasian/Lagen in El Nido).
  • Private boats in Boracay + El Nido + Bohol, curated lunches on sandbars, dedicated photo/video add-ons.
  • Airport fast-track where available + private land transfers.

Night-by-Night (suggested)

el nido zipline
El Nido zipline to neighbouring island
  • D1: Arrive Manila, connect to Boracay (or overnight Manila if late).
  • D2–3: Boracay (island hopping, beach time).
  • D4: Fly to El Nido (often via MNL/CEB).
  • D5–7: El Nido (Tour A or C, plus free day).
  • D8: Fly ENI→CEB → Bohol (short hop), resort check-in.
  • D9–10: Bohol (Balicasag snorkel day; Chocolate Hills & Tarsiers day).
  • D11: Resort day / buffer.
  • D12: Bohol → Manila for international flight.

Transparent Price Building Blocks

the beach house at ocam ocam room

Item Typical price band (for 2) Notes/links
Hotels (pool resorts) US$120–$220 per night (Comfort); $250–$500 (Premium/Lux) Rates fluctuate by season & promos; see hotel sites above. Mövenpick Hotels & Resorts+2Seda Hotels+2
Boracay island hop (join-in) US$29–$40 pp Crystal Cove & snorkel variants.
El Nido Tour A/C (join-in) US$30–$45 pp Lagoon fees/kayaks sometimes extra.
Bohol Balicasag hop US$45–$95 pp Join-in vs private.
Bohol Countryside Day US$56–$79 pp Private/shared samples.
Domestic flights total US$500–$800 (both) Using MNL↔MPH/CEB/ENI/TAG combos; AirSWIFT for ENI legs. AirSwift+1

Tip: If AirSWIFT direct timings don’t line up, route Boracay ↔ El Nido via Manila for the cleanest connections. AirSWIFT operates ENI↔MNL/CEB routes; check your target dates for frequencies. Flyteam

Why these hotels?

Henann Alona Bohol
Henann Alona resort, Bohol
  • Mövenpick Boracay – premium family-friendly resort with private cove & big pool; strong brand confidence. Mövenpick Hotels & Resorts
  • Seda Lio (El Nido)large pool, beach frontage, 5-min to ENI (saves transfer time). Seda Hotels
  • Henann Alona (Bohol) – multiple lagoon-style pools, beachfront, many dining choices nearby. Henann Resort

Booking notes

Bohol Balicasag dolphin watch
Bohol Balicasag dolphin watch
  • Lagoon fees (El Nido) and eco-fees are often collected separately or bundled—spell these out in your inclusions to avoid surprises. Many join-ins list Tour A from ~US$30–$45; private boats vary by season.
  • Bohol Balicasag dolphin watch + snorkel days are extremely popular—pre-book in peak months (Dec–May).
  • Flight buffers: Put an easy day before the long-haul home (D11/D12) so a weather delay won’t domino your international flight.

Hope the above information helps you in planning your trip to the Philippines, which can be made complicated if you want to see all the “top” spots in one, short go. Or you can send us a note and we’d be happy to help you organize a lovely vacation in this naturally beautiful country.

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Home » Palawan » FAQ » 12-Day Island Hopping Itinerary from Manila — Boracay, El Nido, Palawan, Bohol & More

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We are a family operation managing private custom boat tours in the beautiful Palawan area, and are happy to help travelers with their plans through the country, having traveled a lot of it ourselves and planning to visit it all.

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